Chloroplast gene expression level is negatively correlated with evolutionary rates and selective pressure while positively with codon usage bias in Ophioglossum vulgatum L

Autor:	Jing Hao, Yingyi Liang, Jingyao Ping, Jinye Li, Wanxin Shi, Yingjuan Su, Ting Wang
Jazyk:	angličtina
Rok vydání:	2022
Předmět:	Ophioglossum vulgatum Chloroplast genome Gene expression level Evolutionary rate Selective pressure Codon usage bias Botany QK1-989
Zdroj:	BMC Plant Biology, Vol 22, Iss 1, Pp 1-13 (2022)
Druh dokumentu:	article
ISSN:	1471-2229
DOI:	10.1186/s12870-022-03960-8
Popis:	Abstract Background Characterization of the key factors determining gene expression level has been of significant interest. Previous studies on the relationship among evolutionary rates, codon usage bias, and expression level mostly focused on either nuclear genes or unicellular/multicellular organisms but few in chloroplast (cp) genes. Ophioglossum vulgatum is a unique fern and has important scientific and medicinal values. In this study, we sequenced its cp genome and transcriptome to estimate the evolutionary rates (dN and dS), selective pressure (dN/dS), gene expression level, codon usage bias, and their correlations. Results The correlation coefficients between dN, dS, and dN/dS, and Transcripts Per Million (TPM) average values were -0.278 (P = 0.027
Databáze:	Directory of Open Access Journals
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