ursaPGx: a new R package to annotate pharmacogenetic star alleles using phased whole-genome sequencing data

Autor: Gennaro Calendo, Dara Kusic, Jozef Madzo, Neda Gharani, Laura Scheinfeldt
Jazyk: angličtina
Rok vydání: 2024
Předmět:
Zdroj: Frontiers in Bioinformatics, Vol 4 (2024)
Druh dokumentu: article
ISSN: 2673-7647
DOI: 10.3389/fbinf.2024.1351620
Popis: Long-read sequencing technologies offer new opportunities to generate high-confidence phased whole-genome sequencing data for robust pharmacogenetic annotation. Here, we describe a new user-friendly R package, ursaPGx, designed to accept multi-sample phased whole-genome sequencing data VCF input files and output star allele annotations for pharmacogenes annotated in PharmVar.
Databáze: Directory of Open Access Journals