Cobolt: integrative analysis of multimodal single-cell sequencing data

Autor: Boying Gong, Yun Zhou, Elizabeth Purdom
Jazyk: angličtina
Rok vydání: 2021
Předmět:
Zdroj: Genome Biology, Vol 22, Iss 1, Pp 1-21 (2021)
Druh dokumentu: article
ISSN: 1474-760X
DOI: 10.1186/s13059-021-02556-z
Popis: Abstract A growing number of single-cell sequencing platforms enable joint profiling of multiple omics from the same cells. We present Cobolt, a novel method that not only allows for analyzing the data from joint-modality platforms, but provides a coherent framework for the integration of multiple datasets measured on different modalities. We demonstrate its performance on multi-modality data of gene expression and chromatin accessibility and illustrate the integration abilities of Cobolt by jointly analyzing this multi-modality data with single-cell RNA-seq and ATAC-seq datasets.
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