The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species
| Autor: | Kwang-Soo Cho, Ji-Hong Cho, Ju-Sung Im, Jang-Gyu Choi, Young-Eun Park, Dong-Chil Jang, Su-Young Hong, Tae-Ho Park |
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| Jazyk: | angličtina |
| Rok vydání: | 2018 |
| Předmět: | |
| Zdroj: | Mitochondrial DNA. Part B. Resources, Vol 3, Iss 2, Pp 755-757 (2018) |
| Druh dokumentu: | article |
| ISSN: | 2380-2359 23802359 |
| DOI: | 10.1080/23802359.2018.1491342 |
| Popis: | Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum. |
| Databáze: | Directory of Open Access Journals |
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