The Water‐Exclusion Trap (WET): A 3D printable window trap collector that prevents DNA degradation

Autor: Seunghyun Lee, Jinbae Seung, Yunho Yang, Michael Orr, Minhyeuk Lee, Jun‐Hyung Tak, Alfried P. Vogler, Ming Bai, Seunghwan Lee
Jazyk: angličtina
Rok vydání: 2023
Předmět:
Zdroj: Methods in Ecology and Evolution, Vol 14, Iss 11, Pp 2774-2779 (2023)
Druh dokumentu: article
ISSN: 2041-210X
DOI: 10.1111/2041-210X.14205
Popis: Abstract Sampling is one of the most important and fundamental processes in field biology. Among many sampling methods in entomology, window traps have long been considered one of the most effective and standardized methods. Unfortunately, the DNA quality of samples collected by window traps is typically low due to incursion by water, mainly via rainfall. Water cannot be avoided in long‐term surveys, even with a roof, due to wind and condensation. As we move into the genomics era, this shortfall in DNA quality has become problematic for molecular biomonitoring, and solutions are urgently needed. In this study, we developed the Water‐Exclusion Trap (WET), a 3D printable long‐term storable bottom collector for window or pitfall traps. The collection medium in WETs does not dilute because water is excluded and evaporation is limited, maximizing DNA preservation. Our field tests show that the WET outperforms conventional traps in preserving DNA quality. Insect samples preserved in WETs in the field had significantly higher PCR success rates and DNA Integrity Numbers compared to conventional traps. The WET addresses a critical challenge in the use of window traps, DNA degradation caused by water intrusion, and represents a significant advancement in fieldwork for genomic research in entomology. We provide the 3D printing template of the WET, enabling immediate, free use for all. Furthermore, it can be easily customized for different environments and purposes, and can be adapted to a variety of other traps, including pitfall traps, funnel traps and more.
Databáze: Directory of Open Access Journals