A protocol for CRISPR-mediated activation and repression of human endogenous retroviruses in human pluripotent stem cells

Autor: Vidya Padmanabhan Nair, Jens Mayer, Michelle Vincendeau
Jazyk: angličtina
Rok vydání: 2022
Předmět:
Zdroj: STAR Protocols, Vol 3, Iss 2, Pp 101281- (2022)
Druh dokumentu: article
ISSN: 2666-1667
DOI: 10.1016/j.xpro.2022.101281
Popis: Summary: Human endogenous retroviruses (HERVs) comprise many regulatory elements and can regulate host gene activity at different expression levels via multiple mechanisms. Here, we introduce a step-by-step protocol to activate or repress transcription of HERV-K(HML-2) elements using the CRISPRa and CRISPRi technologies in human embryonic stem cells. This protocol can help deciphering the functional role of HERV-K(HML-2) elements in critical biological processes. The protocol may easily be adapted to other cell lines and HERV groups with relatively low sequence heterogeneity.For complete details on the use and execution of this protocol, please refer to Padmanabhan Nair et al. (2021).
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