Identification of a major quantitative trait locus and its candidate underlying genetic variation for rice stigma exsertion rate

Autor: Shouling Xu, Yunchao Zheng, Yang Liu, Xiaohao Guo, Yuanyuan Tan, Qiuping Qian, Qingyao Shu, Jianzhong Huang
Jazyk: angličtina
Rok vydání: 2019
Předmět:
Zdroj: Crop Journal, Vol 7, Iss 3, Pp 350-359 (2019)
Druh dokumentu: article
ISSN: 2214-5141
DOI: 10.1016/j.cj.2018.11.006
Popis: Stigma exsertion in male sterile lines of hybrid rice is important for seed yield. In the present study, ZS616 [Oryza sativa subsp. Xian (indica)], a male sterile line with a stigma exsertion rate (SER) as high as 94.5%, was crossed to DS552, a japonica line with almost no exserted stigmas. F3 plants with extremely low and high SER were sequenced to identify SER-associated quantitative trait loci (QTL). A major QTL for SER, qSER-3.1, was identified along with other QTL on chromosome 3 in a 3.9 Mb region. A total of 307 nonsynonymous single-nucleotide polymorphisms (SNPs) and 27 frame-shift insertion/deletions (InDels) differentiating ZS616 and DS552 were identified in the region containing qSER-3.1. Most SNPs (294) and InDels (25) were excluded after further analysis because they were shared by ZS616 and low (
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