Differential Methylation Patterns in Apomictic vs. Sexual Genotypes of the Diplosporous Grass Eragrostis curvula

Autor: Jose Carballo, Diego Zappacosta, Gianpiero Marconi, Jimena Gallardo, Marco Di Marsico, Cristian A. Gallo, Mario Caccamo, Emidio Albertini, Viviana Echenique
Jazyk: angličtina
Rok vydání: 2021
Předmět:
Zdroj: Plants, Vol 10, Iss 5, p 946 (2021)
Druh dokumentu: article
ISSN: 2223-7747
DOI: 10.3390/plants10050946
Popis: DNA methylation is an epigenetic mechanism by which a methyl group is added to a cytosine or an adenine. When located in a gene/regulatory sequence it may repress or de-repress genes, depending on the context and species. Eragrostis curvula is an apomictic grass in which facultative genotypes increases the frequency of sexual pistils triggered by epigenetic mechanisms. The aim of the present study was to look for correlations between the reproductive mode and specific methylated genes or genomic regions. To do so, plants with contrasting reproductive modes were investigated through MCSeEd (Methylation Context Sensitive Enzyme ddRad) showing higher levels of DNA methylation in apomictic genotypes. Moreover, an increased proportion of differentially methylated positions over the regulatory regions were observed, suggesting its possible role in regulation of gene expression. Interestingly, the methylation pathway was also found to be self-regulated since two of the main genes (ROS1 and ROS4), involved in de-methylation, were found differentially methylated between genotypes with different reproductive behavior. Moreover, this work allowed us to detect several genes regulated by methylation that were previously found as differentially expressed in the comparisons between apomictic and sexual genotypes, linking DNA methylation to differences in reproductive mode.
Databáze: Directory of Open Access Journals