Meta-Analysis of Peripheral Blood Transcriptome Datasets Reveals a Biomarker Panel for Tuberculosis in Patients Infected With HIV

Autor: Yahong Chen, Qiaowen Wang, Shujin Lin, Jinglan Lai, Jing Lin, Wen Ao, Xiao Han, Hanhui Ye
Jazyk: angličtina
Rok vydání: 2021
Předmět:
Zdroj: Frontiers in Cellular and Infection Microbiology, Vol 11 (2021)
Druh dokumentu: article
ISSN: 2235-2988
DOI: 10.3389/fcimb.2021.585919
Popis: Biomarkers are critical for rapid diagnosis of tuberculosis (TB) and could benefit patients with AIDS where diagnosis of TB co-infection is challenging. Meta-analysis is an approach to combine the results of the studies with standard statistical method by weighting each study with different sample size. This study aimed to use meta-analysis to integrate transcriptome datasets from different studies and screen for TB biomarkers in patients who were HIV-positive. Five datasets were subjected to meta-analysis on whole-blood transcriptomes from 640 patients infected with HIV. A total of 293 differentially expressed genes (DEGs) were identified as significant (P0.90 for HIV+TB) in clinical trial and suggests that meta-analysis is an efficient method to integrate transcriptome datasets from different studies.
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