Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19

Autor: Elena De Domenico, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Matthias Becker, Kristian Händler, Joachim L. Schultze
Jazyk: angličtina
Rok vydání: 2020
Předmět:
Zdroj: STAR Protocols, Vol 1, Iss 3, Pp 100233- (2020)
Druh dokumentu: article
ISSN: 2666-1667
DOI: 10.1016/j.xpro.2020.100233
Popis: Summary: In December 2019, a new coronavirus, SARS-CoV-2, which causes the respiratory illness that led to the COVID-19 pandemic, was reported. In the face of such a new pathogen, special precautions must be taken to examine potentially infectious materials due to the lack of knowledge on disease transmissibility, infectivity, and molecular pathogenicity. Here, we present a complete and safe workflow for performing scRNA-seq experiments on blood samples of infected patients from cell isolation to data analysis using the micro-well based BD Rhapsody platform.For complete information on the use and execution of this protocol, please refer to Schulte-Schrepping et al. (2020).
Databáze: Directory of Open Access Journals