valr: Reproducible genome interval analysis in R [version 1; referees: 2 approved]

Autor: Kent A. Riemondy, Ryan M. Sheridan, Austin Gillen, Yinni Yu, Christopher G. Bennett, Jay R. Hesselberth
Jazyk: angličtina
Rok vydání: 2017
Předmět:
Zdroj: F1000Research, Vol 6 (2017)
Druh dokumentu: article
ISSN: 2046-1402
DOI: 10.12688/f1000research.11997.1
Popis: New tools for reproducible exploratory data analysis of large datasets are important to address the rising size and complexity of genomic data. We developed the valr R package to enable flexible and efficient genomic interval analysis. valr leverages new tools available in the ”tidyverse”, including dplyr. Benchmarks of valr show it performs similar to BEDtools and can be used for interactive analyses and incorporated into existing analysis pipelines.
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