Recent insights into the genotype–phenotype relationship from massively parallel genetic assays

Autor: Harry Kemble, Philippe Nghe, Olivier Tenaillon
Jazyk: angličtina
Rok vydání: 2019
Předmět:
Zdroj: Evolutionary Applications, Vol 12, Iss 9, Pp 1721-1742 (2019)
Druh dokumentu: article
ISSN: 1752-4571
DOI: 10.1111/eva.12846
Popis: Abstract With the molecular revolution in Biology, a mechanistic understanding of the genotype–phenotype relationship became possible. Recently, advances in DNA synthesis and sequencing have enabled the development of deep mutational scanning assays, capable of scoring comprehensive libraries of genotypes for fitness and a variety of phenotypes in massively parallel fashion. The resulting empirical genotype–fitness maps pave the way to predictive models, potentially accelerating our ability to anticipate the behaviour of pathogen and cancerous cell populations from sequencing data. Besides from cellular fitness, phenotypes of direct application in industry (e.g. enzyme activity) and medicine (e.g. antibody binding) can be quantified and even selected directly by these assays. This review discusses the technological basis of and recent developments in massively parallel genetics, along with the trends it is uncovering in the genotype–phenotype relationship (distribution of mutation effects, epistasis), their possible mechanistic bases and future directions for advancing towards the goal of predictive genetics.
Databáze: Directory of Open Access Journals