Methods for sequencing the pandemic: benefits of rapid or high-throughput processing [version 2; peer review: 2 approved]

Autor: Krystal Sheridan, Jolene R. Bowers, Brendan Larsen, W. Tanner Porter, David M. Engelthaler, Ashlyn Pfeiffer, Darrin Lemmer, Danielle Vasquez, Megan L. Folkerts, Amber Jones, Marjorie Nguyen, Chris French
Jazyk: angličtina
Rok vydání: 2022
Předmět:
Zdroj: F1000Research, Vol 10 (2022)
Druh dokumentu: article
ISSN: 2046-1402
DOI: 10.12688/f1000research.28352.2
Popis: Genomic epidemiology has proven successful for real-time and retrospective monitoring of small and large-scale outbreaks. Here, we report two genomic sequencing and analysis strategies for rapid-turnaround or high-throughput processing of metagenomic samples. The rapid-turnaround method was designed to provide a quick phylogenetic snapshot of samples at the heart of active outbreaks, and has a total turnaround time of
Databáze: Directory of Open Access Journals