The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae)
| Autor: | Changhai Sui, Shuying Liu, Huimin Liu, Hongzhang Liu |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2018 |
| Předmět: | |
| Zdroj: | Mitochondrial DNA. Part B. Resources, Vol 3, Iss 2, Pp 820-822 (2018) |
| Druh dokumentu: | article |
| ISSN: | 2380-2359 23802359 |
| DOI: | 10.1080/23802359.2018.1483779 |
| Popis: | Chloroplast (cp) genome sequences have become a useful tool for phylogeneitc and evolutionary study in recent reports. Here the complete chloroplast genome of the Paphiopedilum tranlimianum has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 162,127 bp in size, and comprises of a pair of inverted repeat (IR) regions of 31,457 bp each, a large single-copy (LSC) region of 91,711 bp, and a small single-copy (SSC) region of 7,502 bp. The total GC content is 35.4%, while the corresponding values of the LSC, SSC, and IR regions are 32.7%, 26.9%, and 40.9%, respectively. The chloroplast genome contains 133 genes, including 87 protein-coding genes, eight ribosomal RNA genes, and 38 transfer RNA genes. Three genes (ndhA, ndhE, and ndhI) are pseudogenized or lost in its cpDNA. The Maximum-Likelihood phylogenetic analysis showed a close relationship with P. niveum in Orchidaceae. Our findings provide useful information for phylogenetic and evolutionary research of Paphiopedilum species. |
| Databáze: | Directory of Open Access Journals |
| Externí odkaz: |
|