Singular value decomposition analysis of the secondary structure features contributing to the circular dichroism spectra of model proteins

Autor: Tomoki Shiratori, Satoru Goto, Tomoyo Sakaguchi, Takahiro Kasai, Yuta Otsuka, Kyohei Higashi, Kosho Makino, Hideyo Takahashi, Kazushi Komatsu
Jazyk: angličtina
Rok vydání: 2021
Předmět:
Zdroj: Biochemistry and Biophysics Reports, Vol 28, Iss , Pp 101153- (2021)
Druh dokumentu: article
ISSN: 2405-5808
DOI: 10.1016/j.bbrep.2021.101153
Popis: Amyloid fibril formation occurs in restricted environment, such as the interface between intercellular fluids and bio-membranes. Conformational interconversion from α-helix to β-structure does not progress in fluids; however, it can occur after sedimentary aggregation during amyloid fibril formation induced by heat treatment of hen egg white lysozyme (HEWL). Secondary structures of various proteins and denatured proteins titrated with 2,2,2-trifluoroethanol (TFE) were examined using their CD spectra. Gaussian peak/trough and singular value decompositions (SVD) showed that the spectral pattern of the α-helix comprised a sharp trough at wavelength 207 nm and a broad trough at 220 nm. Conversely, we distinguished two patterns for β-sheet—a spread barrel type, corresponding to ConA, and a tightly weaved type, corresponding to the soybean trypsin inhibitor. Herein, we confirmed that the spectral/conformational interconversion of the heat-treated HEWL was not observed in the dissolved fluid.
Databáze: Directory of Open Access Journals