Transformer for one stop interpretable cell type annotation

Autor: Jiawei Chen, Hao Xu, Wanyu Tao, Zhaoxiong Chen, Yuxuan Zhao, Jing-Dong J. Han
Jazyk: angličtina
Rok vydání: 2023
Předmět:
Zdroj: Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Druh dokumentu: article
ISSN: 2041-1723
DOI: 10.1038/s41467-023-35923-4
Popis: Developing computational tools for interpretable cell type annotation in scRNA-seq data remains challenging. Here the authors propose a Transformer-based model for interpretable annotation transfer using biologically understandable entities, and demonstrate its performance on large or atlas datasets.
Databáze: Directory of Open Access Journals