Dynamic Network Reconstruction from Gene Expression Data Describing the Effect of LiCl Stimulation on Hepatocytes

Autor: Zellmer Sebastian, Schmidt-Heck Wolfgang, Gaunitz Frank, Baldysiak-Figiel Alicja, Guthke Reinhardt, Gebhardt Rolf
Jazyk: angličtina
Rok vydání: 2005
Předmět:
Zdroj: Journal of Integrative Bioinformatics, Vol 2, Iss 1, Pp 58-73 (2005)
Druh dokumentu: article
ISSN: 1613-4516
DOI: 10.1515/jib-2005-15
Popis: Wnt/β-catenin signalling plays an important role in zonation of liver parenchyma and in patterning of hepatocyte heterogeneity. A characteristic marker of this heterogeneity is glutamine synthetase, which is expressed only in a subset of pericentrally located hepatocytes. To investigate, whether and how the Wnt/β-catenin signalling pathway is involved a culture of hepatocytes was stimulated by LiCl. This resulted in an increase in the specific GS activity, indicating that the Wnt/β-catenin pathway may participate in regulating GS levels. Affymetrix GeneChip oligonucleotide arrays were used to monitor the gene expression changes during a period from 2 to 24 hours after stimulation by LiCl. Samples from a cultivation without stimulation were used as controls. Based on the gene expression profiles a hypothetic signal transduction network was constructed by a reverse engineering algorithm. The network robustness was tested and the most stable structure was identified.
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