Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt

Autor:	Herman, Chloe, Bolyen, Evan, Simard, Anthony, Gehret, Liz, Caporaso, J. Gregory
Rok vydání:	2024
Předmět:	Quantitative Biology - Other Quantitative Biology
Druh dokumentu:	Working Paper
Popis:	We present q2-fmt, a QIIME 2 plugin that provides diverse methods for assessing the extent of microbiome engraftment following fecal microbiota transplant. The methods implemented here were informed by a recent literature review on approaches for assessing FMT engraftment, and cover aspects of engraftment including Chimeric Asymmetric Community Coalescence, Donated Microbiome Indicator Features, and Temporal Stability. q2-fmt is free for all use, and detailed documentation illustrating worked examples on a real-world data set are provided in the project's documentation. Comment: 5 pages, 1 figure
Databáze:	arXiv
Externí odkaz:	http://arxiv.org/abs/2411.17901 Zobrazit plný text záznamu View this record from Arxiv