MONI can find k-MEMs

Autor: Tatarnikov, Igor, Farahani, Ardavan Shahrabi, Kashgouli, Sana, Gagie, Travis
Rok vydání: 2022
Předmět:
Druh dokumentu: Working Paper
Popis: Suppose we are asked to index a text $T [0..n - 1]$ such that, given a pattern $P [0..m - 1]$, we can quickly report the maximal substrings of $P$ that each occur in $T$ at least $k$ times. We first show how we can add $O (r \log n)$ bits to Rossi et al.'s recent MONI index, where $r$ is the number of runs in the Burrows-Wheeler Transform of $T$, such that it supports such queries in $O (k m \log n)$ time. We then show how, if we are given $k$ at construction time, we can reduce the query time to $O (m \log n)$.
Databáze: arXiv