Correlations in Usage Frequencies and Shannon Entropy for Codons

Autor:	Cocurullo, Diego, Sciarrino, Antonino
Rok vydání:	2016
Předmět:	Quantitative Biology - Other Quantitative Biology
Druh dokumentu:	Working Paper
Popis:	The usage frequencies for codons belonging to quartets are analized, over the whole exonic region, for 92 biological species. Correlation is put into evidence, between the usage frequencies of synonymous codons with third nucleotide A and C and between the usage frequencies of non synonymous codons, belonging to suitable subsets of the quartets, with the same third nucleotide. A correlation is pointed out between amino acids belonging to subsets of the set encoded by quartets of codons. It is remarked that the computed Shannon entropy for quartets is weakly dependent on the biological species. The observed correlations well fit in the mathematical scheme of the crystal basis model of the genetic code. Comment: 42 pages, 12 figures, 33 Tables
Databáze:	arXiv
Externí odkaz:	http://arxiv.org/abs/1609.02141 Zobrazit plný text záznamu View this record from Arxiv