Meaningful timescales from Monte Carlo simulations of molecular systems with hard-core interactions
| Autor: | Costa, Liborio I. |
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| Rok vydání: | 2016 |
| Předmět: | |
| Zdroj: | Journal of Computational Physics, 2016, 326, 773-779 |
| Druh dokumentu: | Working Paper |
| DOI: | 10.1016/j.jcp.2016.09.023 |
| Popis: | A new Markov Chain Monte Carlo method for simulating the dynamics of molecular systems characterized by hard-core interactions is introduced. In contrast to traditional Kinetic Monte Carlo approaches, where the state of the system is associated with minima in the energy landscape, in the proposed method, the state of the system is associated with the set of paths traveled by the atoms and the transition probabilities for an atom to be displaced are proportional to the corresponding velocities. In this way, the number of possible state-to-state transitions is reduced to a discrete set, and a direct link between the Monte Carlo time step and true physical time is naturally established. The resulting rejection-free algorithm is validated against event-driven molecular dynamics: the equilibrium and non-equilibrium dynamics of hard disks converge to the exact results with decreasing displacement size. Comment: 14 pages, 5 figures + 5 pages of Supplementary Information including computational details and additional figures and schemes |
| Databáze: | arXiv |
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