BioNetGen 2.2: Advances in Rule-Based Modeling

Autor:	Harris, Leonard A., Hogg, Justin S., Tapia, Jose-Juan, Sekar, John A. P., Gupta, Sanjana A., Korsunsky, Ilya, Arora, Arshi, Barua, Dipak, Sheehan, Robert P., Faeder, James R.
Rok vydání:	2015
Předmět:	Quantitative Biology - Quantitative Methods Quantitative Biology - Molecular Networks
Zdroj:	Bioinformatics 32, 3366-3368 (2016)
Druh dokumentu:	Working Paper
DOI:	10.1093/bioinformatics/btw469
Popis:	BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation, and analysis of larger and more complex models than previously possible. Comment: 3 pages, 1 figure, 1 supplementary text file. Supplementary text includes a brief discussion of the RK-PLA along with a performance analysis, two tables listing all new actions/arguments added in BioNetGen 2.2, and the "BioNetGen Quick Reference Guide". Accepted for publication in Bioinformatics
Databáze:	arXiv
Externí odkaz:	http://arxiv.org/abs/1507.03572 Zobrazit plný text záznamu View this record from Arxiv