Identification and characterization of human observational studies in nutritional epidemiology on gut microbiomics for joint data analysis

Autor: Pinart, Mariona, Nimptsch, Katharina, Forslund, Sofia, Schlicht, Kristina, Gueimonde, Miguel, Brigidi, Patrizia, Turroni, Silvia, Ahrens, Wolfgang, Hebestreit, Antje, Wolters, Maike, Dötsch, Andreas, Nöthlings, Ute, Oluwagbemigun, Kolade, Cuadrat, Rafael, Schulze, Matthias, Standl, Marie, Schloter, Michael, De Angelis, Maria, Iozzo, Patricia, Guzzardi, Maria Angela, Vlaemynck, Geertrui, Penders, John, Jonkers, Daisy, Stemmer, Maya, Chiesa, Giulia, Cavalieri, Duccio, De Filippo, Carlotta, Ercolini, Danilo, De Filippis, Francesca, Ribet, David, Achamrah, Najate, Tavolacci, Marie-Pierre, Déchelotte, Pierre, Bouwman, Jildau, Laudes, Matthias, Pischon, Tobias
Přispěvatelé: Pinart M., Nimptsch K., Forslund S.K., Schlicht K., Gueimonde M., Brigidi P., Turroni S., Ahrens W., Hebestreit A., Wolters M., Dotsch A., Nothlings U., Oluwagbemigun K., Cuadrat R.R.C., Schulze M.B., Standl M., Schloter M., De Angelis M., Iozzo P., Guzzardi M.A., Vlaemynck G., Penders J., Jonkers D.M.A.E., Stemmer M., Chiesa G., Cavalieri D., De Filippo C., Ercolini D., De Filippis F., Ribet D., Achamrah N., Tavolacci M.-P., Dechelotte P., Bouwman J., Laudes M., Pischon T., Molecular Epidemiology Research Group, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), 13125 Berlin, Germany, Experimental and Clinical Research Center, A Cooperation of Charité-Universitätsmedizin Berlin and Max Delbrück Center for Molecular Medicine, Lindenberger Weg 80, 13125 Berlin, Germany, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, 10117 Berlin, Germany, Host-Microbiome Factors in Cardiovascular Disease Lab, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, 13125 Berlin, Germany, German Centre for Cardiovascular Research (DZHK), Partner Site Berlin, 10785 Berlin, Germany, Berlin Institute of Health (BIH), 10178 Berlin, Germany, Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany, Institute of Diabetes and Clinical Metabolic Research, University of Kiel, 24105 Kiel, Germany, Department of Microbiology and Biochemistry of Dairy Products, IPLA-CSIC, 33300 Villaviciosa, Spain, Diet, Microbiota and Health Group, Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), 33011 Oviedo, Spain, Department of Medical and Surgical Sciences, University of Bologna, Via Massarenti 9, 40138 Bologna, Italy, Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy, Leibniz Institute for Prevention Research and Epidemiology-BIPS, 28359 Bremen, Germany, Institute of Statistics, Bremen University, 28359 Bremen, Germany, Department of Physiology and Biochemistry of Nutrition, Max Rubner-Institut (MRI)-Federal Research Institute of Nutrition and Food, 76131 Karlsruhe, Germany, Nutritional Epidemiology Unit, Institute of Nutrition and Food Sciences, University of Bonn, 53115 Bonn, Germany, Department of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, 14558 Nuthetal, Germany, Institute of Nutritional Science, University of Potsdam, 14558 Potsdam, Germany, German Center for Diabetes Research (DZD), 85764 Neuherberg, Germany, Institute of Epidemiology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany, Research Unit for Comparative Microbiome Analysis, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany, Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, 70126 Bari, Italy, Institute of Clinical Physiology, National Research Council, Via Moruzzi 1, 56124 Pisa, Italy, Department Technology and Food, Flanders Research Institute for Agriculture, Fisheries and Food, 9090 Melle, Belgium, Department of Medical Microbiology, School of Nutrition and Translational Research in Metabolism (NUTRIM) and Care and Public Health Research Institute (CAPHRI), Maastricht University Medical Center, 6200 MD Maastricht, The Netherlands, Department of Internal Medicine, Division Gastroenterology-Hepatology, NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht University Medical Center, 6200 MD Maastricht, The Netherlands, Department of Industrial Engineering and Management, Ben-Gurion University of the Negev, Beer-Sheva P.O. Box 653, Israel, Department of Pharmacological and Biomolecular Sciences, Università degli Studi di Milano, 20133 Milan, Italy, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Florence, Italy, Institute of Agricultural Biology and Biotechnology National Research Council, Via Moruzzi 1, 56124 Pisa, Italy, Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy, Task Force on Microbiome Studies, University of Naples Federico II, 80134 Naples, Italy, Nutrition, inflammation et dysfonctionnement de l'axe intestin-cerveau (ADEN), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Institute for Research and Innovation in Biomedicine (IRIB), Normandie Université (NU)-Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), UNIROUEN - UFR Santé (UNIROUEN UFR Santé), Normandie Université (NU)-Normandie Université (NU), Service de nutrition [CHU Rouen], Normandie Université (NU)-Normandie Université (NU)-CHU Rouen, Normandie Université (NU), Centre d'Investigation Clinique [CHU Rouen] (CIC Rouen), Hôpital Charles Nicolle [Rouen]-CHU Rouen, Normandie Université (NU)-Normandie Université (NU)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Microbiology and Systems Biology Group, TNO, Utrechtseweg 48, 3704 HE Zeist, The Netherlands, Biobank Technology Platform, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), 13125 Berlin, Germany, Biobank Core Facility, Berlin Institute of Health at Charité-Universitätsmedizin Berlin, 10178 Berlin, Germany, European Commission, Fonds de la Recherche Scientifique (Fédération Wallonie-Bruxelles), Research Foundation - Flanders, Institut National de la Santé et de la Recherche Médicale (France), Federal Ministry of Education and Research (Germany), Federal Ministry of Food and Agriculture (Germany), Ministero dell'Istruzione, dell'Università e della Ricerca, Ministero delle Politiche Agricole Alimentari e Forestali, National Institutes of Health (US), Ministero della Salute, Instituto de Salud Carlos III, Netherlands Organisation for Health Research and Development, Austrian Research Promotion Agency, Federal Ministry of Education, Science and Research (Austria), Ministry of Science, Technology and Space (Israel), Swedish Research Council for Sustainable Development, German Research Foundation, RS: CAPHRI - R4 - Health Inequities and Societal Participation, Med Microbiol, Infect Dis & Infect Prev, RS: NUTRIM - R2 - Liver and digestive health, Interne Geneeskunde, Pinart, M., Nimptsch, K., Forslund, S. K., Schlicht, K., Gueimonde, M., Brigidi, P., Turroni, S., Ahrens, W., Hebestreit, A., Wolters, M., Dotsch, A., Nothlings, U., Oluwagbemigun, K., Cuadrat, R. R. C., Schulze, M. B., Standl, M., Schloter, M., De Angelis, M., Iozzo, P., Guzzardi, M. A., Vlaemynck, G., Penders, J., Jonkers, D. M. A. E., Stemmer, M., Chiesa, G., Cavalieri, D., De Filippo, C., Ercolini, D., De Filippis, F., Ribet, D., Achamrah, N., Tavolacci, M. -P., Dechelotte, P., Bouwman, J., Laudes, M., Pischon, T., Humboldt-Universität zu Berlin, CHU Rouen
Jazyk: angličtina
Rok vydání: 2021
Předmět:
Zdroj: Nutrients
Nutrients, MDPI, 2021, 13 (9), pp.3292. ⟨10.3390/nu13093292⟩
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nutrients 13 (2021). doi:10.3390/nu13093292
info:cnr-pdr/source/autori:Pinart, Mariona; Nimptsch, Katharina; Forslund, Sofia K.; Schlicht, Kristina; Gueimonde, Miguel; Brigidi, Patrizia; Turroni, Silvia; Ahrens, Wolfgang; Hebestreit, Antje; Wolters, Maike; Dötsch, Andreas; Nöthlings, Ute; Oluwagbemigun, Kolade; Cuadrat, Rafael R.C.; Schulze, Matthias B.; Standl, Marie; Schloter, Michael; De Angelis, Maria; Iozzo, Patricia; Guzzardi, Maria Angela; Vlaemynck, Geertrui; Penders, John; Jonkers, Daisy M.A.E.; Stemmer, Maya; Chiesa, Giulia; Cavalieri, Duccio; De Filippo, Carlotta; Ercolini, Danilo; De Filippis, Francesca; Ribet, David; Achamrah, Najate; Tavolacci, Marie Pierre; Déchelotte, Pierre; Bouwman, Jildau; Laudes, Matthias; Pischon, Tobias/titolo:Identification and characterization of human observational studies in nutritional epidemiology on gut microbiomics for joint data analysis/doi:10.3390%2Fnu13093292/rivista:Nutrients/anno:2021/pagina_da:/pagina_a:/intervallo_pagine:/volume:13
Nutrients, Vol 13, Iss 3292, p 3292 (2021)
Nutrients, 13(9):3292
Nutrients, 13(9):3292. Multidisciplinary Digital Publishing Institute (MDPI)
Volume 13
Issue 9
Nutrients 13:3292 (2021)
ISSN: 2072-6643
DOI: 10.3390/nu13093292⟩
Popis: In any research field, data access and data integration are major challenges that even large, well-established consortia face. Although data sharing initiatives are increasing, joint data analyses on nutrition and microbiomics in health and disease are still scarce. We aimed to identify observational studies with data on nutrition and gut microbiome composition from the Intestinal Microbiomics (INTIMIC) Knowledge Platform following the findable, accessible, interoperable, and reusable (FAIR) principles. An adapted template from the European Nutritional Phenotype Assessment and Data Sharing Initiative (ENPADASI) consortium was used to collect microbiome-specific information and other related factors. In total, 23 studies (17 longitudinal and 6 cross-sectional) were identified from Italy (7), Germany (6), Netherlands (3), Spain (2), Belgium (1), and France (1) or multiple countries (3). Of these, 21 studies collected information on both dietary intake (24 h dietary recall, food frequency questionnaire (FFQ), or Food Records) and gut microbiome. All studies collected stool samples. The most often used sequencing platform was Illumina MiSeq, and the preferred hypervariable regions of the 16S rRNA gene were V3–V4 or V4. The combination of datasets will allow for sufficiently powered investigations to increase the knowledge and understanding of the relationship between food and gut microbiome in health and disease.
This research was supported by the Joint Action “European Joint Programming Initiative “A Healthy Diet for a Healthy Life” (JPI HDHL)”and the respective national/regional funding organisations: Fund for Scientific Research (FRS—FNRS, Belgium); Research Foundation—Flanders (FWO, Belgium); INSERM Institut National de la Santé et de la Recherche Médicale (France); Federal Ministry of Education and Research (BMBF, FKZ 01EA1906B, 01EA1906D); Federal Ministry of Food and Agriculture (BMEL) through the Federal Office for Agriculture and Food (BLE, Germany, grant number 2819ERA10F); Ministry of Education, University and Research (MIUR), Ministry of agricultural, food and forestry policies (MiPAAF), National Institute of Health (ISS) on behalf of Ministry of Health (Italy); National Institute of Health Carlos III (Spain); The Netherlands Organisation for Health Research and Development (ZonMw, The Netherlands), Austrian Research Promotion Agency (FFG) on behalf of the Austrian Federal Ministry for Education, Science and Research (BMBWF), Ministry of Science and Technology (Israel), Formas (Sweden). This research was also supported by the German Research Foundation (DFG, KFO339: “food@”).
Databáze: OpenAIRE
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