Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present and future

Autor: Huws, Sharon A., Creevey, Christopher J., Oyama, Linda B., Mizrahi, Itzhak, Denman, Stuart E., Popova, Milka, Muñoz-Tamayo, Rafael, Forano, Evelyne, Waters, Sinead M., Hess, Matthias, Tapio, Ilma, Smidt, Hauke, Krizsan, Sophie J., Yáñez-Ruiz, David R., Belanche, Alejandro, Guan, Leluo, Gruninger, Robert J., McAllister, Tim A., Newbold, C.J., Roehe, Rainer, Dewhurst, Richard J., Snelling, Tim J., Watson, Mick, Suen, Garret, Hart, Elizabeth H., Kingston-Smith, Alison H., Scollan, Nigel D., Do Prado, Rodolpho M., Pilau, Eduardo J., Mantovani, Hilario C., Attwood, Graeme T., Edwards, Joan E., McEwan, Neil R., Morrisson, Steven, Mayorga, Olga L., Elliott, Christopher, Morgavi, Diego P.
Přispěvatelé: European Commission, Ministerio de Economía y Competitividad (España), Biotechnology and Biological Sciences Research Council (UK), Institute for Global Food Security [Belfast], Queen's University [Belfast] (QUB), Department of Life Sciences and The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev (BGU), Commonwealth Scientific and Industrial Research Organisation Agriculture and Food, Queensland Bioscience Precinct, Unité Mixte de Recherches sur les Herbivores - UMR 1213 (UMRH), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Modélisation Systémique Appliquée aux Ruminants (MoSAR), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Microbiologie Environnement Digestif Santé - Clermont Auvergne (MEDIS), Université Clermont Auvergne (UCA)-INRA Clermont-Ferrand-Theix, Animal and Grassland Research and Innovation Centre (AGRICE), College of Agricultural and Environmental Sciences, University of California [Davis] (UC Davis), University of California-University of California, Natural Resources Institute Finland (LUKE), Department of Agrotechnology and Food Sciences [Wageningen], Wageningen University and Research [Wageningen] (WUR), Department of Agricultural Research for Northern Sweden, Swedish University of Agricultural Sciences (SLU), Consejo Superior de Investigaciones Científicas [Spain] (CSIC), Department of Agricultural, Food and Nutritional Science, University of Alberta, Lethbridge Research Centre, Agriculture and Agri-Food Canada, Scotland's Rural College (SRUC), The Rowett Institute, University of Aberdeen, The Roslin Institute and the Royal (Dick) School of Veterinary Studies (R(D)SVS), University of Edinburgh, Departments of Botany and Bacteriology, University of Wisconsin-Madison, Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Laboratório de Biomoléculas e Espectrometria de Massas-Labiomass, Departamento de Química, Universidade Estadual de Maringá, Universidade Federal de Viçosa (UFC), AgResearch Limited, School of Pharmacy and Life Sciences, Robert Gordon University (RGU), Sustainable Livestock, Agri-Food and Bio-Sciences Institute, Agri-Food and Biosciences Institute, Colombian Agricultural Research Corporation, European Project: 640384 ,RuMicroPlas, European Project: 706899,EQUIANFUN, Institute for Global Food Security, Department of Life Sciences and the National Institute for Biotechnology in the Negev, VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique (INRA), INRA Clermont-Ferrand-Theix-Université Clermont Auvergne (UCA), Animal and Bioscience Research Department, Irish Agriculture and Food Development Authority, Natural Resources Institute Finland, Department of Agrotechnology and Food Sciences, Wageningen University and Research Centre [Wageningen] (WUR), Estacion Experimental del Zaidin, Spanish National Research Council (CSIC), Lethbridge Research and Development Centre, Agriculture and Agri-Food [Ottawa] (AAFC), Scotland's Rural College (SCUR), Department of Microbiology, Nippon Dental University, Grasslands Research Centre, Laboratory of Microbiology, Northern Regional Institution of Hungarian National Public Health and Medical Officer Service, Robert Gordon University, Sustainable Livestock, Unité Mixte de Recherche sur les Herbivores - UMR 1213 (UMRH), VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Microbiologie Environnement Digestif Santé (MEDIS), INRA Clermont-Ferrand-Theix-Université Clermont Auvergne [2017-2020] (UCA [2017-2020]), Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), EU H2020 Marie Curie Fellowship 706899, European Project: 640384,H2020,ERC-2014-STG,RuMicroPlas(2016), AgroParisTech-Institut National de la Recherche Agronomique (INRA), Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), Institut National de la Recherche Agronomique (INRA)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020]), University of California (UC)-University of California (UC), Agriculture and Agri-Food (AAFC), Biotechnology and Biological Sciences Research Council (BBSRC)-Aberystwyth University
Jazyk: angličtina
Rok vydání: 2018
Předmět:
Zdroj: Huws, S A, Creevey, C J, Oyama, L B, Mizrahi, I, Denman, S, Popova, M, Munoz Tamayo, R, Forano, E, Waters, S M, Hess, M, Tapio, I, Smidt, H, Kritsan, S, Yanez Ruiz, D R, Belanche, A, Guan, L, Gruninger, R J, McAllister, T A, Newbold, C J, Roehe, R, Dewhurst, R, Snelling, T J, Watson, M, Suen, G, Hart, E H, Kingston-Smith, A H, Scollan, N D, do Prado, R M, Pilau, E J, Mantovani, H C, Attwood, G T, Edwards, J E, McEwan, N R, Morrisson, S, Moyorga, Elliott, C & Morgavi, D P 2018, ' Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present and future ', Frontiers in Microbiology, vol. 9, 2161 . https://doi.org/10.3389/fmicb.2018.02161
Frontiers in Microbiology 9 (2018) SEP
Frontiers in Microbiology
Digital.CSIC. Repositorio Institucional del CSIC
instname
Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.1-34. ⟨10.3389/fmicb.2018.02161⟩
Frontiers in Microbiology (9), . (2018)
Frontiers in Microbiology, Frontiers Media, 2018, 9, ⟨10.3389/fmicb.2018.02161⟩
Frontiers in microbiology, vol 9, iss SEP
Huws, S, Creevey, C, Oyama, L B, Mizrahi, I, Denman, S E, Popova, M, Muñoz-Tamayo, R, Forano, E, Waters, S M, Hess, M, Tapio, I, Smidt, H, Krizsan, S J, Yáñez-Ruiz, D R, Belanche, A, Guan, L L, Gruninger, R J, McAllister, T, Newbold, C J, Roehe, R, Dewhurst, R J, Snelling, T J, Watson, M, Suen, G, Hart, E H, Kingston-Smith, A H, Scollan, N, do Prado, R M, Pilau, E J, Mantovani, H C, Attwood, G T, Edwards, J E, McEwan, N R, Morrisson, S, Mayorga, O L, Elliott, C & Morgavi, D P 2018, ' Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future ', Frontiers in Microbiology, vol. 9, 2161, pp. 1-33 . https://doi.org/10.3389/fmicb.2018.02161
Frontiers in Microbiology, Vol 9 (2018)
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02161⟩
Frontiers in Microbiology, 9(SEP)
ISSN: 1664-302X
Popis: The rumen is a complex ecosystem composed of anaerobic bacteria, protozoa, fungi, methanogenic archaea and phages. These microbes interact closely to breakdown plant material that cannot be digested by humans, whilst providing metabolic energy to the host and, in the case of archaea, producing methane. Consequently, ruminants produce meat and milk, which are rich in high-quality protein, vitamins and minerals, and therefore contribute to food security. As the world population is predicted to reach approximately 9.7 billion by 2050, an increase in ruminant production to satisfy global protein demand is necessary, despite limited land availability, and whilst ensuring environmental impact is minimized. Although challenging, these goals can be met, but depend on our understanding of the rumen microbiome. Attempts to manipulate the rumen microbiome to benefit global agricultural challenges have been ongoing for decades with limited success, mostly due to the lack of a detailed understanding of this microbiome and our limited ability to culture most of these microbes outside the rumen. The potential to manipulate the rumen microbiome and meet global livestock challenges through animal breeding and introduction of dietary interventions during early life have recently emerged as promising new technologies. Our inability to phenotype ruminants in a high-throughput manner has also hampered progress, although the recent increase in >omic> data may allow further development of mathematical models and rumen microbial gene biomarkers as proxies. Advances in computational tools, high-throughput sequencing technologies and cultivation-independent >omics> approaches continue to revolutionize our understanding of the rumen microbiome. This will ultimately provide the knowledge framework needed to solve current and future ruminant livestock challenges.
SH, DM, MP, RM-T, SW, IT, HS, JE, SK, GA, and CC acknowledge the support of ERA-net gas co-fund for funding (Project name: RumenPredict). SH, HM and CC acknowledge support from BBSRC (BBL/L026716/1 and BBL/L026716/2) and a British Council Newton Institutional Links funding (Grant 172629373). IM acknowledges funding from the European Research Council under the European Union's Horizon 2020 research and innovation program (Grant 640384). JE acknowledges funding from an EU H2020 Marie Curie Fellowship (706899). CC, AK-S, and EH were supported by the Biotechnology and Biological Sciences Research Council (Grants BBS/OS/GC/000011B and BBS/E/W/0012843D). CN and OM acknowledge the support of the British Council Newton Institutional Links funding (Grant 216425215). SRUC receives financial support from the Scottish Government's Rural and Environment Science and Analytical Services Division (RESAS). RD and RR acknowledge financial support from the Biotechnology and Biological Sciences Research Council (BBSRC BB/N01720X/1). DY-R and AB acknowledge funding from MINECO, Spain (Grant AGL2017-86938-R). GS acknowledges funding from the U.S. Department of Agriculture National Institute of Food and Agriculture foundational (Grant 2015-67015-23246). EP acknowledges funding from CNPq (Grant 401590/2014-3). All authors are also members of the Global Research Alliance Rumen Microbial Genomics network.
Databáze: OpenAIRE
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