DT40 knock-out and knock-in studies determine the regions necessary and sufficient for transcription and epigenetic conversion of the chicken Ig-β gene

Autor: Kakeru, Itaya, Kozue, Chayahara, Takanori, Hirai, Tomohiro, Minbuta, Takafumi, Uchikawa, Tomoki, Tanaka, Shinya, Masaki, Kosuke, Kuroda, Masao, Ono
Rok vydání: 2011
Předmět:
Zdroj: Genes to cells : devoted to molecularcellular mechanisms. 16(3)
ISSN: 1365-2443
Popis: The chicken Ig-β locus is organized by three cell-type-specific genes and two ubiquitously expressed genes. B-cell-specific DNase I hypersensitive sites (DHS) in that locus, including three present inside the flanking gene, were grouped into six regions and deleted. The deletions decreased Ig-β mRNA content to0.1% of that of normal DT40 cells and converted epigenetic parameters such as histone modifications, CG methylation and DNase I hypersensitivity into inactive states. Knocked-in DHS regions into knock-out cells reactivated both transcription of the Ig-β gene and epigenetic parameters. Thus, the collaboration of the scattered regulatory regions was essential and sufficient not only for B-cell-specific transcription of the Ig-β gene, but also for the conversion of epigenetic parameters. On the basis of the knock-in studies, we determined the regions involved in the conversion and maintenance of the epigenetic parameters. These scattered regulatory regions were limited in vicinity such as in an intron of the gene, in the intergenic regions and in the introns of a flanking gene.
Databáze: OpenAIRE