A molecular dynamics study of protein denaturation induced by sulfonate-based surfactants

Autor: Armen H, Poghosyan, Aram A, Shahinyan, Gayane R, Kirakosyan, Naira M, Ayvazyan, Yevgeni S, Mamasakhlisov, Garegin A, Papoian
Rok vydání: 2021
Předmět:
Zdroj: Journal of molecular modelingReferences. 27(9)
ISSN: 0948-5023
Popis: Microsecond timescale explicit-solvent atomistic simulations were carried out to investigate how anionic surfactants modulate protein structure and dynamics. We found that lysozyme undergoes near-complete denaturation at the high concentration ( 0.1 M) of sodium pentadecyl sulfonate (SPDS), while only partial denaturation occurs at the concentration slightly below 0.1 M. In large part, protein denaturation is structurally manifested by disappearance of helical segments and loss of tertiary interactions. The computational prediction of the extent of burial of cysteine residues was experimentally validated by measuring the accessibility of the respective sulfhydryl groups. Overall, our work indicates an interesting synergy between electrostatic and hydrophobic contributions to lysozyme's denaturation process by anionic surfactants. In fact, first disulfide bridges and hydrogen bonds from protein surface to SPDS head groups loosen the protein globule followed by fuller denaturation via insertion of the surfactant's hydrophobic tails into the protein core.
Databáze: OpenAIRE
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