Rational and combinatorial strategies for designing oligonucleotides targeted to RNA structures

Autor: J J, Toulmé, R, Le Tinévez, C, Boiziau, E, Dausse
Rok vydání: 1997
Předmět:
Zdroj: Nucleic acids symposium series. (36)
ISSN: 0261-3166
Popis: Many RNA structures play a key role in the regulation of gene expression. We designed synthetic oligonucleotides able to interact with folded RNA regions (see Toulmé et al., Biochimie (1996) 78, 663-673, for a review). We have demonstrated that a decanucleotide can form a triple helix with the stem of the hairpin responsible for ribosomal frame-shifting of the gag-pro message of HTLV-I, leading to the inhibition of translation. We have isolated, through an in vitro selection procedure, from a library composed of oligonucleotides with a random part of 30 nucleotides, sequences able to bind to the TAR RNA element of HIV-1 with a dissociation constant of 20-50 nM. The association between the two partners involve non-canonical interactions. This extends the range of potential targets for antisense sequences to functional RNA structures.
Databáze: OpenAIRE