Software Choice and Sequencing Coverage Can Impact Plastid Genome Assembly-A Case Study in the Narrow Endemic

Autor: Eka, Giorgashvili, Katja, Reichel, Calvinna, Caswara, Vuqar, Kerimov, Thomas, Borsch, Michael, Gruenstaeudl
Rok vydání: 2021
Zdroj: Frontiers in plant science. 13
ISSN: 1664-462X
Popis: Most plastid genome sequences are assembled from short-read whole-genome sequencing data, yet the impact that sequencing coverage and the choice of assembly software can have on the accuracy of the resulting assemblies is poorly understood. In this study, we test the impact of both factors on plastid genome assembly in the threatened and rare endemic shrub
Databáze: OpenAIRE