Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology
| Autor: | Debmalya Barh, Anderson Rodrigues dos Santos, Anderson Miyoshi, Flávia S. Rocha, Arshad Islam, Syeda Marriam Bakhtiar, Vinicius A. C. Abreu, Dayana Ribeiro, Fernanda Alves Dorella, Luis C. Guimarães, Borna Müller, Karina K Fiaux, Carlos R. Diniz, Siomar de Castro Soares, Amjad Ali, Rommel Thiago Jucá Ramos, Ulisses de Pádua Pereira, Eudes Barbosa, Adriana Ribeiro Carneiro, Flávia Figueira Aburjaile, Artur Silva, Maria Paula Cruz Schneider, Vasco Azevedo, Sandeep Tiwari, Syed Shah Hassan, Anne Cybelle Pinto, Neha Jain, Sintia Almeida, Maria Silvanira Barbosa, Louise Cerdeira |
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| Rok vydání: | 2012 |
| Předmět: |
Antelope
Genetics Whole genome sequencing Pseudogene Corynebacterium pseudotuberculosis Biovar Genome project Biology Ion Torrent biology.organism_classification Genome DNA sequencing Short Genome Reports genome sequencing Gram-positive pathogen s: biovar ovis liver lesion caseous lymphadenitis/cheesy gland disease Gene |
| Zdroj: | Standards in Genomic Sciences |
| ISSN: | 1944-3277 |
| Popis: | The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non-sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19%. The analysis of the genome sequence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis. |
| Databáze: | OpenAIRE |
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