BCdatabaser: on-the-fly reference database creation for (meta-)barcoding
| Autor: | Birgit Gemeinholzer, Jörg Schultz, Sonja Hohlfeld, Alexander Keller, Andreas Kolter, Markus J. Ankenbrand |
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| Rok vydání: | 2019 |
| Předmět: |
0106 biological sciences
Statistics and Probability Source code Databases Factual Interface (Java) Computer science media_common.quotation_subject Context (language use) Documentation computer.software_genre 010603 evolutionary biology 01 natural sciences Biochemistry DNA barcoding bepress|Life Sciences|Ecology and Evolutionary Biology World Wide Web 03 medical and health sciences Disk formatting bepress|Life Sciences Animals DNA Barcoding Taxonomic Molecular Biology 030304 developmental biology media_common 0303 health sciences Computer Science Applications Computational Mathematics Identification (information) Taxon Computational Theory and Mathematics Web service computer Software |
| DOI: | 10.32942/osf.io/cmfu2 |
| Popis: | Summary DNA barcoding and meta-barcoding have become irreplaceable in research and applications, where identification of taxa alone or within a mixture, respectively, becomes relevant. Pioneering studies were in the microbiological context, yet nowadays also plants and animals become targeted. Given the variety of markers used, formatting requirements for classifiers and constant growth of primary databases, there is a need for dedicated reference database creation. We developed a web and command-line interface to generate such on-the-fly for any applicable marker and taxonomic group with optional filtering, formatting and restriction specific for (meta-)barcoding purposes. Also, databases optionally receive a DOI, making them well-documented with meta-data, publicly sharable and citable. Availability and implementation source code: https://www.github.com/molbiodiv/bcdatabaser, webservice: https://bcdatabaser.molecular.eco, documentation: https://molbiodiv.github.io/bcdatabaser. |
| Databáze: | OpenAIRE |
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