Carnobacterium antarcticum sp. nov., a psychrotolerant, alkaliphilic bacterium isolated from sandy soil in Antarctica
| Autor: | Sidong Zhu, Xudong Shen, Zehao Xue, Xiangdong Ma, Jifang Yang, Shangling Xiong, Danqiu Lin, Xing Wang, Jigang Chen, Bingxia Dong |
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| Rok vydání: | 2018 |
| Předmět: |
DNA
Bacterial 0301 basic medicine Firmicutes Sequence analysis Antarctic Regions Peptidoglycan Carnobacterium Diaminopimelic Acid Microbiology 03 medical and health sciences chemistry.chemical_compound RNA Ribosomal 16S Phylogeny Soil Microbiology Ecology Evolution Behavior and Systematics Base Composition biology Lactobacillales Fatty Acids Nucleic Acid Hybridization Sequence Analysis DNA General Medicine biology.organism_classification 16S ribosomal RNA Bacterial Typing Techniques 030104 developmental biology chemistry Diaminopimelic acid Soil microbiology Bacteria |
| Zdroj: | International Journal of Systematic and Evolutionary Microbiology. 68:1672-1677 |
| ISSN: | 1466-5034 1466-5026 |
| Popis: | A novel, alkaliphilic, psychrotolerant, facultative anaerobe, designated CP1T, was isolated from sandy soil near the Davis Station in Antarctica. The short-rod-shaped cells displayed Gram-positive staining and did not form spores. Strain CP1T was able to grow at temperatures between 4 and 36 °C, pH 6.0–9.5, and in the presence of up to 5.0 % (w/v) NaCl. 16S rRNA gene and multilocus (pheS, rpoA, and atpA) sequence analysis revealed Carnobacterium mobile DSM 4848T and Carnobacterium iners LMG 26642T as the closest relatives (97.4 and 97.1 % 16S rRNA gene sequence similarity, respectively). The genomic G+C content was 38.1 mol%, and DNA–DNA hybridization with DSM 4848T revealed 32.4±3.4 % similarity. The major fatty acid components were C14 : 0 and C16 : 1ω9c. The cell wall contained meso-diaminopimelic acid and was of peptidoglycan type A1γ. Based on physiological, genotypic and biochemical characteristics, strain CP1T represents a novel species of the genus Carnobacterium for which the name Carnobacterium antarcticum sp. nov. is proposed. The type strain is CP1T (=DSM 103363T=CGMCC 1.15643T). |
| Databáze: | OpenAIRE |
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