Aeromonas aquatica sp. nov., Aeromonas finlandiensis sp. nov. and Aeromonas lacus sp. nov. isolated from Finnish waters associated with cyanobacterial blooms
| Autor: | Roxana Beaz-Hidalgo, Christina Lyra, Katri A. Berg, Mohammad J. Hossain, R.M. Niemi, Fadua Latif-Eugenín, Jarkko Rapala, Mark R. Liles, Maria José Figueras |
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| Přispěvatelé: | Unitat de Micologia i Microbiologia Ambiental, Departament de Ciències Mèdiques Bàsiques, Universitat Rovira i Virgili |
| Rok vydání: | 2015 |
| Předmět: |
0723-2020
sekvensointi Molecular Sequence Data water systematiikka DNA Ribosomal järvet Applied Microbiology and Biotechnology Microbiology new taxa taksonomia Genus RNA Ribosomal 16S Suomi dnaX Cluster Analysis lajit sinilevät syanobakteerit Finland Phylogeny Ecology Evolution Behavior and Systematics Ciències de la salut perinnöllisyystiede biology Strain (chemistry) Phylogenetic tree ta1184 DNA–DNA hybridization ta1183 Health sciences geenitekniikka DNA-Directed RNA Polymerases biology.organism_classification 16S ribosomal RNA rpoB Ciencias de la salud Lakes Aeromonas Genes Bacterial sekvenssianalyysi ANI polyphasic mikrobiologia Multilocus Sequence Typing |
| Zdroj: | Systematic and Applied Microbiology |
| ISSN: | 0723-2020 |
| DOI: | 10.1016/j.syapm.2015.02.005 |
| Popis: | Three groups of Aeromonas strains isolated from Finland lakes experiencing cyanobacterial blooms could not be assigned to any known species of this genus on the basis of 16S rRNA and rpoD gene sequences. The Multilocus Phylogenetic Analysis (MLPA) of the concatenated sequence of seven genes (gyrB, rpoD, recA, dnaJ, gyrA, dnaX and atpD; 4093bp) showed that the three groups of strains did not cluster with any known Aeromonas spp. and formed three independent lineages. This was confirmed by performing the analysis with their closest relatives using 15 genes (the latter 7 and cpn60, dnaK, gltA, mdh, radA, rpoB, tsf, zipA; 8751bp). Furthermore, ANI results between the genomes of the type strains of the three potential new species and those of their close relatives were all |
| Databáze: | OpenAIRE |
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