Gemmobacter lutimaris sp. nov., a marine bacterium isolated from a tidal flat
| Autor: | Dong Wan Lee, Yeonjae Yoo, Jong Seong Khim, Un Hyuk Yim, In Geol Choi, Jae Jin Kim, Hongjae Park, Byeonghyeok Park, Hanbyul Lee, Gyu Hyeok Kim, Bong-Oh Kwon, Seong Woo Jeon, Beom Seok Kim |
|---|---|
| Rok vydání: | 2019 |
| Předmět: |
DNA
Bacterial 0106 biological sciences 0301 basic medicine Geologic Sediments Ubiquinone 010603 evolutionary biology 01 natural sciences Microbiology 03 medical and health sciences RNA Ribosomal 16S Republic of Korea Genotype Seawater Rhodobacteraceae Gene Phospholipids Phylogeny Ecology Evolution Behavior and Systematics chemistry.chemical_classification Base Composition Strain (chemistry) Phylogenetic tree biology Fatty Acids Nucleic Acid Hybridization Fatty acid Sequence Analysis DNA General Medicine biology.organism_classification 16S ribosomal RNA Bacterial Typing Techniques 030104 developmental biology chemistry Proteobacteria Bacteria |
| Zdroj: | International Journal of Systematic and Evolutionary Microbiology. 69:1676-1681 |
| ISSN: | 1466-5034 1466-5026 |
| Popis: | A novel cream-pigmented marine bacterium, designated strain YJ-T1-11T, was isolated from a tidal flat at Yeongjong-do, Republic of Korea. Cells were rod-shaped, non-motile, aerobic, Gram-reaction-negative, oxidase-positive and catalase-positive. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain YJ-T1-11T clustered with Gemmobacter fontiphilus JS43T (98.3 %) within the genus Gemmobacter and its closest neighbours were G.emmobacter aquatilis DSM 3857T (98.5 %), Gemmobacter aquaticus A1-9T (98.4 %), G emmobacter lanyuensis Orc-4T (98.4 %), G emmobacter fontiphilus JS43T (98.3 %), G emmobacter caeni DCA-1T (98.2 %), G emmobacter nanjingensis Y12T (97.5 %) and G emmobacter tilapiae Ruye-53T (97.2 %). Average nucleotide identity values between the genome sequences of strain YJ-T1-11T and the related type strains ranged from 77.08 to 90.48 %. The predominant fatty acid of strain YJ-T1-11T was summed feature 8 (comprising C18 : 1ω7c and/or C18 : 1ω6c). The major isoprenoid quinone was Q-10 and the DNA G+C content was 65.6 mol%. The polar lipid profile consisted of phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, diphosphatidylglycerol and three unidentified lipids. The DNA–DNA relatedness values between strain YJ-T1-11T and the type strains of the 12 phylogenetically related species of the genus Gemmobacter were 23.6–53.7 %. On the basis of the genotypic, chemotaxonomic and phenotypic data, strain YJ-T1-11T is considered to represent a novel species of the genus Gemmobacter , for which the name Gemmobacter lutimaris sp. nov. is proposed. The type strain is YJ-T1-11T (=KCTC 62715T=JCM 32828T). |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|