Case report: 16-yr life history and genomic evolution of an ER+ HER2− breast cancer
| Autor: | Bing Xu, Sarah Viet, E.A. Ehli, Tobias Meißner, Casey Williams, Jason L. Petersen, Padmapriya Swaminathan, Christel M. Davis, Stephanie Theel, Amy Krie, Anu Amallraja, Rachel Elsey, Gareth E. Davies |
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| Rok vydání: | 2020 |
| Předmět: |
Receptor
ErbB-2 medicine.drug_class DNA Mutational Analysis Breast Neoplasms Metastasis Evolution Molecular Transcriptome Phosphatidylinositol 3-Kinases Breast cancer multifocal breast carcinoma medicine Humans Phylogeny Aromatase inhibitor Aromatase Inhibitors business.industry SOXB1 Transcription Factors Estrogen Receptor alpha Genomics General Medicine Middle Aged medicine.disease Metastatic breast cancer Primary tumor Tumor progression Mutation Cancer research Hormonal therapy Female Trefoil Factor-1 business Research Article Signal Transduction |
| Zdroj: | Cold Spring Harbor Molecular Case Studies |
| ISSN: | 2373-2873 2373-2865 |
| Popis: | Metastatic breast cancer is one of the leading causes of cancer-related death in women. Limited studies have been done on the genomic evolution between primary and metastatic breast cancer. We reconstructed the genomic evolution through the 16-yr history of an ER+ HER2− breast cancer patient to investigate molecular mechanisms of disease relapse and treatment resistance after long-term exposure to hormonal therapy. Genomic and transcriptome profiling was performed on primary breast tumor (2002), initial recurrence (2012), and liver metastasis (2015) samples. Cell-free DNA analysis was performed at 11 time points (2015–2017). Mutational analysis revealed a low mutational burden in the primary tumor that doubled at the time of progression, with driver mutations in PI3K–Akt and RAS–RAF signaling pathways. Phylogenetic analysis showed an early branching off between primary tumor and metastasis. Liquid biopsies, although initially negative, started to detect an ESR1 E380Q mutation in 2016 with increasing allele frequency until the end of 2017. Transcriptome analysis revealed 721 (193 up, 528 down) genes to be differentially expressed between primary tumor and first relapse. The most significantly down-regulated genes were TFF1 and PGR, indicating resistance to aromatase inhibitor (AI) therapy. The most up-regulated genes included PTHLH, S100P, and SOX2, promoting tumor growth and metastasis. This phylogenetic reconstruction of the life history of a single patient's cancer as well as monitoring tumor progression through liquid biopsies allowed for uncovering the molecular mechanisms leading to initial relapse, metastatic spread, and treatment resistance. |
| Databáze: | OpenAIRE |
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