iNucs: inter-nucleosome interactions
| Autor: | Remco Loos, Mohammad M. Karimi, Sunil Nahata, Mehrdad Oveisi, Robin C. Allshire, Ghulam J. Mufti, Stefan Dimitrov, Nogayhan Seymen, Manu Shukla, Masae Ohno, Yuichi Taniguchi |
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| Přispěvatelé: | Luigi Martelli, Pier |
| Jazyk: | angličtina |
| Rok vydání: | 2021 |
| Předmět: |
Statistics and Probability
Supplementary data 0303 health sciences AcademicSubjects/SCI01060 Computer science Computational biology Python (programming language) Genome Analysis Applications Notes Biochemistry Computer Science Applications 03 medical and health sciences Computational Mathematics 0302 clinical medicine Computational Theory and Mathematics Nucleosome Molecular Biology computer 030217 neurology & neurosurgery 030304 developmental biology computer.programming_language |
| Zdroj: | Oveisi, M, Shukla, M, Seymen, N, Ohno, M, Taniguchi, Y, Nahata, S, Loos, R, Mufti, G J, Allshire, R C, Dimitrov, S, Karimi, M M & Luigi Martelli, P (ed.) 2021, ' iNucs : Inter-nucleosome interactions ', Bioinformatics, vol. 37, no. 23, pp. 4562-4563 . https://doi.org/10.1093/bioinformatics/btab698 Bioinformatics |
| DOI: | 10.1093/bioinformatics/btab698 |
| Popis: | Motivation Deciphering nucleosome–nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available. Results We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools. Availabilityand implementation https://github.com/Karimi-Lab/inucs/. Supplementary information Supplementary data are available at Bioinformatics online. |
| Databáze: | OpenAIRE |
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