Genome-Wide Identification, Expression Pattern Analysis and Evolution of the Ces/Csl Gene Superfamily in Pineapple (Ananas comosus)
| Autor: | S. V. G. N. Priyadarshani, Jiashuo Zhang, Shijiang Cao, Lili Lin, Anqi Hu, Mohammad Aslam, Maokai Yan, Han Cheng, Simon Peter Ojolo, Heming Zhao, Yuan Qin, Yuan Yu, Guangqiu Cao |
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| Rok vydání: | 2019 |
| Předmět: |
cellulose synthase gene
0106 biological sciences 0301 basic medicine RNA-Seq Plant Science 01 natural sciences Genome Article 03 medical and health sciences Phylogenetics lcsh:Botany Arabidopsis Gene family Ananas comosus Gene Ecology Evolution Behavior and Systematics Synteny Genetics Ecology biology Phylogenetic tree biology.organism_classification lcsh:QK1-989 expression profile 030104 developmental biology 010606 plant biology & botany |
| Zdroj: | Plants Plants, Vol 8, Iss 8, p 275 (2019) Volume 8 Issue 8 |
| ISSN: | 2223-7747 |
| DOI: | 10.3390/plants8080275 |
| Popis: | The cellulose synthase (Ces) and cellulose synthase-like (Csl) gene families belonging to the cellulose synthase gene superfamily, are responsible for the biosynthesis of cellulose and hemicellulose of the plant cell wall, and play critical roles in plant development, growth and evolution. However, the Ces/Csl gene family remains to be characterized in pineapple, a highly valued and delicious tropical fruit. Here, we carried out genome-wide study and identified a total of seven Ces genes and 25 Csl genes in pineapple. Genomic features and phylogeny analysis of Ces/Csl genes were carried out, including phylogenetic tree, chromosomal locations, gene structures, and conserved motifs identification. In addition, we identified 32 pineapple AcoCes/Csl genes with 31 Arabidopsis AtCes/Csl genes as orthologs by the syntenic and phylogenetic approaches. Furthermore, a RNA-seq investigation exhibited the expression profile of several AcoCes/Csl genes in various tissues and multiple developmental stages. Collectively, we provided comprehensive information of the evolution and function of pineapple Ces/Csl gene superfamily, which would be useful for screening out and characterization of the putative genes responsible for tissue development in pineapple. The present study laid the foundation for future functional characterization of Ces/Csl genes in pineapple. |
| Databáze: | OpenAIRE |
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