Bacterial biota of shrimp intestine is significantly modified by the use of a probiotic mixture: a high throughput sequencing approach
| Autor: | Luis R. Martínez-Córdova, Francisco Vargas-Albores, Teresa Gollas-Galván, Marco A. Porchas-Cornejo, Marcel Martínez-Porchas, Enrique Villalpando-Canchola |
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| Jazyk: | angličtina |
| Předmět: |
0301 basic medicine
animal structures Intestinal microbiota Firmicutes 030106 microbiology Earth and Planetary Sciences(all) Aquaculture Aquatic Science Oceanography law.invention Microbiology 03 medical and health sciences Probiotic lcsh:Oceanography law Environmental Science(all) lcsh:QH540-549.5 lcsh:GC1-1581 biology business.industry Probiotics fungi biology.organism_classification 16S ribosomal RNA Shrimp 030104 developmental biology Bacterial diversity Metagenomics lcsh:Ecology Proteobacteria business Bacteria |
| Zdroj: | Helgoland Marine Research, Vol 71, Iss 1, Pp 1-10 (2017) |
| ISSN: | 1438-387X |
| DOI: | 10.1186/s10152-017-0485-z |
| Popis: | The use of probiotics is a common practice of current shrimp aquaculture. Despite the immunophysiological responses that have been measured in shrimp exposed to probiotics, no information is currently available on the effect of this practice on the intestinal microbiota. The objective of this work was to evaluate the effect of a probiotic mixture on the intestinal microbiota of shrimp cultured under farm conditions. A culture-independent method based on high-throughput-sequencing (16S rRNA) was used to examine intestinal bacterial communities. A traditional system (without probiotics) was used as the reference. Targeted metagenomics analysis revealed that the probiotic mixture was based on bacteria in the phyla Proteobacteria and Firmicutes. A total of 23 species of bacteria were detected in the probiotic mixture; of these, 11 were detected in the intestine of shrimp reared in both systems, and 12 were novel for the system. Eight of the novel species were detected in shrimp cultured with the probiotic mixture; however, none of these novel species were related to marine or inclusively aquacultural environments, and only one (Bacillus subtilis) was recognized as probiotic for shrimp. The use of the probiotic mixture modified the bacterial profile of the shrimp intestine; however, most of the bacteria incorporated into the intestine were nonindigenous to the marine environment with no previous evidence of probiotic effects on any marine organism. The use of this probiotic mixture may represent a risk of causing environmental imbalances, particularly because farms using these types of probiotic mixtures discharge their effluents directly into the ocean without prior treatment. |
| Databáze: | OpenAIRE |
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