Additional file 5 of A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae

Autor: Sim, Choon K., Kashaf, Sara Saheb, Stacy, Apollo, Proctor, Diana M., Almeida, Alexandre, Bouladoux, Nicolas, Chen, Mark, Finn, Robert D., Belkaid, Yasmine, Conlan, Sean, Segre, Julia A.
Rok vydání: 2022
DOI: 10.6084/m9.figshare.19343104
Popis: Additional file 4. a Percentage of reads with a Kraken2 taxonomic classification using standard RefSeq or GTDB databases. Error bars denote SEM. b Relative abundance of the only significant genus Akkermansia between susceptible and nonsusceptible microbiota. c Top 5 species that show a trend between susceptible and nonsusceptible microbiota. d Percentage of reads with an eggNOG functional annotation. For (a), p-value is calculated by a two-tailed t-test. For (b) and (c), p-value is calculated using the linear model in MaAsLin2 and adjusted by Benjamini-Hochberg. *p-value < 0.05, ***p-value < 0.001.
Databáze: OpenAIRE