Creating genetic reference datasets: Indirect sampling of target species using terrestrial leeches as sample 'collectors'

Autor: Minh Thang Le, Anke Schmidt, Benjamin M. Rawson, Anh H. Q. Nguyen, Andrew Tilker, Andreas Wilting, Joerns Fickel, An Nguyen, Thanh Van Nguyen, Jan Axtner
Rok vydání: 2021
Předmět:
Zdroj: Environmental DNA, 4(2):311-325
ISSN: 2637-4943
Popis: Sampling genetic material from rare and often secretive mammals can be difficult in challenging environments such as tropical rainforests. Large-scale sampling is important however for resolving species' taxonomic uncertainties, as well as to help provide genetic material for reference databases that can be used with DNA forensics to combat the illegal wildlife trade. Environmental DNA (eDNA) and invertebrate-derived DNA (iDNA) offer a promising way to overcome this sampling bottleneck, though to date e/iDNA studies have been primarily used to obtain information about species presence using barcoding or metabarcoding approaches. In this study, we collected 4,710 terrestrial leeches across six protected areas in the Annamite Mountains of Viet Nam and Laos and sequenced fragments (223–694 bp) of mt-Cytb and/or mt-Dcr of the mitogenomes from six species that are frequently found in the illegal wildlife trade. Although amplification success was generally low (
Databáze: OpenAIRE