Letter on the results of the BASiNET method in the paper 'A systematic evaluation of computational tools for lncRNA identification'

Autor:	Fabrício Martins Lopes, Matheus H Pimenta-Zanon
Rok vydání:	2022
Předmět:	Computational Biology RNA Long Noncoding Molecular Biology Algorithms Information Systems
Zdroj:	Briefings in bioinformatics. 23(5)
ISSN:	1477-4054
Popis:	This letter points out a conceptual error made by the authors of a published paper, which presents a review and evaluation of computational methods in lncRNA identification. The error was made in the execution of the BASiNET method when considering an example file (toy model) made available by the authors with the aim of showing how a classification model could be stored in a file for later use. In this letter, this error is contextualized, the correct use of the BASiNET method is pointed out and the results of its correct execution to one of the datasets used in the review article are presented. The results clearly show the misuse of the method and present its correct use so that it can be fairly compared with other methods in the literature and prevent its misuse from being replicated by new studies.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e92df25b3268b9f3950d4088318e3891 https://pubmed.ncbi.nlm.nih.gov/35914949 Zobrazit plný text záznamu Plný text ve formátu PDF Plný text ve formátu HTML
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