Prot-Prop: J-tool to predict the subcellular location of proteins based on physiochemical characterization
| Autor: | Sangzuala Sailo, Brindha Senthilkumar, Senthilkumar Nachimuthu, Gurusubramanian Guruswami |
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| Rok vydání: | 2012 |
| Předmět: |
Source code
Theoretical computer science Java Computer science Interface (Java) media_common.quotation_subject Health Informatics computer.software_genre General Biochemistry Genetics and Molecular Biology User-Computer Interface Software Sequence Analysis Protein Amino Acids Databases Protein computer.programming_language media_common Platform independent Internet Virtual appliance business.industry A protein Computational Biology Proteins Computer Science Applications Characterization (materials science) Operating system Programming Languages business computer Hydrophobic and Hydrophilic Interactions Algorithms |
| Zdroj: | Interdisciplinary sciences, computational life sciences. 4(4) |
| ISSN: | 1867-1462 |
| Popis: | PROT-PROP is a computational tool to characterize 27 physicochemical properties of a protein along with its subcellular location (intra or extra) in a single-window application. Other significant features of this software include calculation of numerical values for hydrophobicity, hydrophilicity; composition of small and large amino acids; net hydrophobic content in terms of low/high; and Navie's algorithm to calculate theoretical pI. PROT-PROP is an easy-to-install platform independent implementation of JAVA under a user-friendly interface. It is a standalone version as a virtual appliance and source code for platforms supporting Java 1.5.0 and higher versions, and downloadable from the web http://www.mzu.edu.in/schools/biotechnology.html . PROT-PROP can run under Windows and Macintosh Operating Systems. PROT-PROP is distributed with its source code so that it may be adapted or customized, if desired. |
| Databáze: | OpenAIRE |
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