Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
| Autor: | Ángel T. Martínez, Zhen Zeng, Fei Ren, Zilan Wen, Markus Gressler, Tommaso Raffaello, Francisco J. Ruiz-Dueñas, Sirma Mihaltcheva, Juna Lee, Michael R. Thon, Bernard Henrissat, Andriy Kovalchuk, Abbot O. Oghenekaro, Susana Camarero, Jasmyn Pangilinan, Kerrie Barry, Igor V. Grigoriev, Francis Martin, Mengxia Liu, Ana Serrano, Robert Riley, Fred O. Asiegbu, Otto Miettinen |
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| Přispěvatelé: | University of Manitoba [Winnipeg], University of Helsinki, Spanish National Research Council [Madrid] (CSIC), Friedrich-Schiller-Universität = Friedrich Schiller University Jena [Jena, Germany], Architecture et fonction des macromolécules biologiques (AFMB), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), King Abdulaziz University, Lawrence Berkeley National Laboratory [Berkeley] (LBNL), Minerva Foundation Institute for Medical Research, Department of Energy / Joint Genome Institute (DOE), Los Alamos National Laboratory (LANL), University of California [Berkeley], University of California, Centro de Investigaciones Biológicas (CSIC), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Universidad de Salamanca, Interactions Arbres-Microorganismes (IAM), Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), academy of Finland 307580United States Department of Energy (DOE) DE-AC02-05CH11231EnzOx2 EU project BBI-PPP-2015-2-720297GENOBIOREF project of the Spanish Ministry of Economy, Industry and Competitiveness BIO2017-86559-R, European Project: 7720297(1978), Helsingin yliopisto = Helsingfors universitet = University of Helsinki, University of California [Berkeley] (UC Berkeley), University of California (UC), Department of Forest Sciences, Forest Ecology and Management, Helsinki Institute of Sustainability Science (HELSUS), Viikki Plant Science Centre (ViPS), Academy of Finland, Department of Energy (US), European Commission, Ministerio de Economía, Industria y Competitividad (España), Oghenekaro, Abbot O., Kovalchuk, Andriy, Raffaello, Tommaso, Camarero, Susana, Gressler, Markus, Henrissat, Bernard, Martínez, Ángel T., Miettinen, Otto, Ruiz-Dueñas, F. J., Thon, Michael R., Wen, Zilan, Grigoriev, Igor V., Asiegbu, Fred O., Oghenekaro, Abbot O. [0000-0003-3725-9529], Kovalchuk, Andriy [0000-0001-8704-4644], Raffaello, Tommaso [0000-0002-4074-0682], Camarero, Susana [0000-0002-2812-895X], Gressler, Markus [0000-0001-5669-7618], Henrissat, Bernard [0000-0002-3434-8588], Martínez, Ángel T. [0000-0002-1584-2863], Miettinen, Otto [0000-0001-7502-710X], Ruiz-Dueñas, F. J. [0000-0002-9837-5665], Thon, Michael R. [0000-0002-7225-7003], Wen, Zilan [0000-0002-9388-8760], Grigoriev, Igor V. [0000-0002-3136-8903], Asiegbu, Fred O. [0000-0003-0223-7194] |
| Jazyk: | angličtina |
| Rok vydání: | 2020 |
| Předmět: |
0106 biological sciences
0301 basic medicine Latex [SDV]Life Sciences [q-bio] Gene Transfer Secondary Metabolism lcsh:Medicine 01 natural sciences Genome Hymenochaetales Cell Wall Gene Expression Regulation Fungal 2.2 Factors relating to the physical environment Aetiology lcsh:Science Phylogeny 11832 Microbiology and virology 2. Zero hunger 4112 Forestry Multidisciplinary biology Phylogenetic tree Ecological genetics Wood Enzymes Fungal Infectious Diseases Host-Pathogen Interactions 1181 Ecology evolutionary biology [SDE]Environmental Sciences Genome Fungal Infection Biotechnology Gene Transfer Horizontal Fungus Article Horizontal Fungal Proteins 03 medical and health sciences Botany Genetics Author Correction Whole genome sequencing Comparative genomics Human Genome lcsh:R Rigidoporus microporus 15. Life on land biology.organism_classification 030104 developmental biology Gene Expression Regulation Microbial Interactions 1182 Biochemistry cell and molecular biology lcsh:Q Hevea brasiliensis Polyporales Microporus 010606 plant biology & botany |
| Zdroj: | Scientific Reports Scientific Reports, Nature Publishing Group, 2020, 10 (1), ⟨10.1038/s41598-020-62150-4⟩ Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-62150-4⟩ Scientific reports, vol 10, iss 1 Scientific Reports, Vol 10, Iss 1, Pp 1-15 (2020) Digital.CSIC. Repositorio Institucional del CSIC instname |
| ISSN: | 2045-2322 |
| DOI: | 10.1038/s41598-020-62150-4⟩ |
| Popis: | 15 p.-6 fig.-3 tab. Fungal plant pathogens remain a serious threat to the sustainable agriculture and forestry, despite the extensive efforts undertaken to control their spread. White root rot disease is threatening rubber tree (Hevea brasiliensis) plantations throughout South and Southeast Asia and Western Africa, causing tree mortality and severe yield losses. Here, we report the complete genome sequence of the basidiomycete fungus Rigidoporus microporus, a causative agent of the disease. Our phylogenetic analysis confirmed the position of R. microporus among the members of Hymenochaetales, an understudied group of basidiomycetes. Our analysis further identified pathogen’s genes with a predicted role in the decay of plant cell wall polymers, in the utilization of latex components and in interspecific interactions between the pathogen and other fungi. We also detected putative horizontal gene transfer events in the genome of R. microporus. The reported first genome sequence of a tropical rubber tree pathogen R. microporus should contribute to the better understanding of how the fungus is able to facilitate wood decay and nutrient cycling as well as tolerate latex and utilize resinous extractives. This project was financially supported by Academy of Finland (Grant No. 307580). The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. A.T.M., S.C., F.J.R.D. and A.S. were funded by the EnzOx2 (BBI-PPP-2015-2-720297; www.enzox2.eu) EU project, and the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Economy, Industry and Competitiveness,co-financed by FEDER funds. |
| Databáze: | OpenAIRE |
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