The UCSC Genome Browser database: update 2010
| Autor: | Andy Pohl, Brooke Rhead, Brian J. Raney, Timothy R. Dreszer, Mark Diekhans, Galt P. Barber, Robert M. Kuhn, Laurence R. Meyer, Jennifer Hillman-Jackson, Pauline A. Fujita, Rachel A. Harte, W. James Kent, David Haussler, Angie S. Hinrichs, Katrina Learned, Fan Hsu, Kate R. Rosenbloom, Hiram Clawson, Ann S. Zweig, Donna Karolchik, Kayla E. Smith, Michael Pheasant, Belinda Giardine |
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| Jazyk: | angličtina |
| Rok vydání: | 2009 |
| Předmět: |
Models
Molecular Information Storage and Retrieval Genomics Genome browser Biology ENCODE computer.software_genre Genome 03 medical and health sciences Annotation 0302 clinical medicine Databases Genetic Genetics Animals Humans Bigwig 030304 developmental biology computer.programming_language 0303 health sciences Internet Multiple sequence alignment Database Computational Biology Genetic Variation Articles Invertebrates ComputingMethodologies_PATTERNRECOGNITION Phenotype Human genome Genome Fungal Databases Nucleic Acid computer 030217 neurology & neurosurgery Software |
| Zdroj: | Nucleic Acids Research |
| ISSN: | 1362-4962 0305-1048 |
| Popis: | The University of California, Santa Cruz (UCSC) Genome Browser website (http://genome.ucsc.edu/) provides a large database of publicly available sequence and annotation data along with an integrated tool set for examining and comparing the genomes of organisms, aligning sequence to genomes, and displaying and sharing users' own annotation data. As of September 2009, genomic sequence and a basic set of annotation 'tracks' are provided for 47 organisms, including 14 mammals, 10 non-mammal vertebrates, 3 invertebrate deuterostomes, 13 insects, 6 worms and a yeast. New data highlights this year include an updated human genome browser, a 44-species multiple sequence alignment track, improved variation and phenotype tracks and 16 new genome-wide ENCODE tracks. New features include drag-and-zoom navigation, a Wiki track for user-added annotations, new custom track formats for large datasets (bigBed and bigWig), a new multiple alignment output tool, links to variation and protein structure tools, in silico PCR utility enhancements, and improved track configuration tools. |
| Databáze: | OpenAIRE |
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