Phylogenetic relationship of Paenibacillus species based on putative replication origin regions and analysis of an yheCD-like sequence found in this region
| Autor: | Chisa Yasunaga-Aoki, Kazuki Mori, Kazuhiro Iiyama, Kousuke Tashiro, Jae Man Lee, Hiroaki Mon, Masahiro Otao, Shin-ichiro Asano, Takahiro Kusakabe |
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| Rok vydání: | 2014 |
| Předmět: |
DNA Replication
Molecular Sequence Data Bacillus subtilis Applied Microbiology and Biotechnology Biochemistry Genome Protein Structure Secondary Analytical Chemistry Paenibacillus Intergenic region Bacterial Proteins Gene Order Nucleotide Amino Acid Sequence Molecular Biology Phylogeny Genetics chemistry.chemical_classification biology Phylogenetic tree Organic Chemistry Genomics General Medicine biology.organism_classification DnaA Open reading frame chemistry bacteria Sequence Analysis Biotechnology |
| Zdroj: | Bioscience, Biotechnology, and Biochemistry. 78:891-897 |
| ISSN: | 1347-6947 0916-8451 |
| DOI: | 10.1080/09168451.2014.905188 |
| Popis: | To determine the phylogenetic relationship among Paenibacillus species, putative replication origin regions were compared. In the rsmG-gyrA region, gene arrangements in Paenibacillus species were identical to those of Bacillus species, with the exception of an open reading frame (orf14) positioned between gyrB and gyrA, which was observed only in Paenibacillus species. The orf14 product was homologous to the endospore-associated proteins YheC and YheD of Bacillus subtilis. Phylogenetic analysis based on the YheCD proteins suggested that Orf14 could be categorized into the YheC group. In the Paenibacillus genome, DnaA box clusters were found in rpmH-dnaA and dnaA-dnaN intergenic regions, known as box regions C and R, respectively; this localization was similar to that observed in B. halodurans. A phylogenetic tree based on the nucleotide sequences of the whole replication origin regions suggested that P. popilliae, P. thiaminolyticus, and P. dendritiformis are closely related species. |
| Databáze: | OpenAIRE |
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