Soil biodiversity and DNA barcodes: opportunities and challenges
| Autor: | Philippe Lemanceau, Panos Panagos, Martha B. Dunbar, Gerard Arjen de Groot, Alberto Orgiazzi |
|---|---|
| Přispěvatelé: | Institute for the Environment and Sustainability, Wageningen University and Research Centre (WUR), Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement |
| Jazyk: | Dutch; Flemish |
| Rok vydání: | 2015 |
| Předmět: |
Soil biodiversity
[SDV]Life Sciences [q-bio] Soil biology Biodiversity Soil Science soil biodiversity Biology assemblages Microbiology Ecosystem services diversity 03 medical and health sciences Standard Operating Procedures [SDV.BV]Life Sciences [q-bio]/Vegetal Biology patterns Resilience (network) License Environmental planning resilience Organism 030304 developmental biology 2. Zero hunger 0303 health sciences Ecology DNA 04 agricultural and veterinary sciences 15. Life on land bacterial communities molecular microbial ecology fungal metabarcoding [SDE]Environmental Sciences 040103 agronomy & agriculture extraction Dierecologie 0401 agriculture forestry and fisheries identification Identification (biology) Animal Ecology ecosystem services |
| Zdroj: | Soil Biology and Biochemistry 80 (2015) 1 Soil Biology and Biochemistry Soil Biology and Biochemistry, Elsevier, 2015, 80, pp.244-250. ⟨10.1016/j.soilbio.2014.10.014⟩ Soil Biology and Biochemistry, 80(1), 244-250 |
| ISSN: | 0038-0717 |
| DOI: | 10.1016/j.soilbio.2014.10.014⟩ |
| Popis: | Soils encompass a huge diversity of organisms which mostly remains to be characterized due to a number of methodological and logistical issues. Nonetheless, remarkable progress has been made in recent years toward developing strategies to characterize and describe soil biodiversity, especially thanks to the development of molecular approaches relying on direct DNA extraction from the soil matrix. Metabarcoding can be applied to DNA from any environment or organism, and is gaining increasing prominence in biodiversity studies. This approach is already commonly used to characterize soil microbial communities and its application is now being extended to other soil organisms, i.e. meso- and macro-fauna. These developments offer unprecedented scientific and operational opportunities in order to better understand soil biodiversity distribution and dynamics, and to propose tools and strategies for biodiversity diagnosis. However, these opportunities also come with challenges that the scientific community must face. Such challenges are related to i) clarification of terminology, (ii) standardisation of methods and further methodological development for additional taxonomic groups, (iii) development of a common database, and (iv) ways to avoid waste of information and data derived from metabarcoding. In order to facilitate common application of metabarcoding in soil biodiversity assessment, we discuss these opportunities and challenges and propose solutions towards a more homogeneous framework. JRC.H.5-Land Resources Management |
| Databáze: | OpenAIRE |
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