A reference integrated map for cultivated grapevine (Vitis vinifera L.) from three crosses, based on 283 SSR and 501 SNP-based markers
| Autor: | Riccardo Velasco, M. Stella Grando, Angelica M. Jermakow, Patrice This, Andrey Zharkikh, Mark R. Thomas, Dustin Cartwright, Anne-Françoise Adam-Blondon, Roberto Viola, Michela Troggio, Marco Stefanini, Silvia Vezzulli, G. Coppola |
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| Přispěvatelé: | Istituto Agrario di San Michele all'Adige (IASMA), Plant Industry, Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), Myriad Genetics Inc., Unité de recherche en génomique végétale (URGV), Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Diversité et adaptation des plantes cultivées (UMR DIAPC), Université Montpellier 2 - Sciences et Techniques (UM2)-Institut National de la Recherche Agronomique (INRA)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2) |
| Rok vydání: | 2008 |
| Předmět: |
0106 biological sciences
Genetic Markers DNA Plant Transferability LOCI Single-nucleotide polymorphism Minisatellite Repeats Biology 01 natural sciences Polymorphism Single Nucleotide 03 medical and health sciences Genetics SNP QTL ANALYSIS Vitis Cultivar Vitis vinifera 030304 developmental biology Genomic organization Molecular breeding Whole genome sequencing 0303 health sciences FUNGAL DISEASE RESISTANCE [SDV.GEN]Life Sciences [q-bio]/Genetics IDENTIFICATION MICROSATELLITE MARKERS Chromosome Mapping General Medicine DNA GENETIC-LINKAGE MAP GENOME SINGLE NUCLEOTIDE POLYMORPHISMS Hybridization Genetic Agronomy and Crop Science Genome Plant 010606 plant biology & botany Biotechnology |
| Zdroj: | TAG Theoretical and Applied Genetics TAG Theoretical and Applied Genetics, Springer Verlag, 2008, 117 (4), pp.499-511. ⟨10.1007/s00122-008-0794-3⟩ TAG Theoretical and Applied Genetics, 2008, 117 (4), pp.499-511. ⟨10.1007/s00122-008-0794-3⟩ |
| ISSN: | 0040-5752 1432-2242 |
| Popis: | International audience; We have developed an integrated map from five elite cultivars of Vitis vinifera L.; Syrah, Pinot Noir, Grenache, Cabernet Sauvignon and Riesling which are parents of three segregating populations. A new source of markers, SNPs, identified in ESTs and unique BAC-end sequences was added to the available IGGP reference set of SSRs. The complete integrated map comprises 1,134 markers (350 AFLP (R), 332 BESs, 169 ESTs, 283 SSRs) spanning 1,443 cM over 19 linkage groups and shows a mean distance between neighbouring loci of 1.27 cM. Marker order was mainly conserved between the integrated map and the highly dense Syrah x Pinot Noir consensus map except for few inversions. Moreover, the marker order has been validated through the assembled genome sequence of Pinot Noir. We have also assessed the transferability of SNP-based markers among five V. vinifera varieties, enabling marker validation across different genotypes. This integrated map can serve as a fundamental tool for molecular breeding in V. vinifera and related species and provide a basis for studies of genome organization and evolution in grapevines. |
| Databáze: | OpenAIRE |
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