Données de protéomique comparatives des ovaires de 5 espèces de crustacés amphipodes
| Autor: | Jean Armengaud, Christine Almunia, Judith Trapp, Olivier Geffard, Olivier Pible, Jean-Charles Gaillard, Arnaud Chaumot |
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| Přispěvatelé: | Milieux aquatiques, écologie et pollutions (UR MALY), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), IRSTEA LYON UR MALY FRA, CEA MARCOULE BAGNOLS SUR CEZE FRA |
| Jazyk: | angličtina |
| Rok vydání: | 2015 |
| Předmět: |
PROTEINS
Zoology GAMMARUS 010501 environmental sciences Proteomics Bioinformatics lcsh:Computer applications to medicine. Medical informatics 01 natural sciences Daphnia pulex 03 medical and health sciences Gammarus roeseli PROTEINE 14. Life underwater lcsh:Science (General) 030304 developmental biology 0105 earth and related environmental sciences Data Article 0303 health sciences ORGANE REPRODUCTEUR Multidisciplinary biology BASE DE DONNEES biology.organism_classification Crustacean Gammarus pulex Pulex Proteome [SDE]Environmental Sciences lcsh:R858-859.7 AMPHIPODE DATA BASE Parhyale hawaiensis lcsh:Q1-390 AMPHIPODA |
| Zdroj: | Data in Brief Data in Brief, 2015, 5, pp.1-6. ⟨10.1016/j.dib.2015.07.037⟩ Data in Brief, Elsevier, 2015, 5, pp.1-6. ⟨10.1016/j.dib.2015.07.037⟩ Data in Brief, Vol 5, Iss C, Pp 1-6 (2015) |
| ISSN: | 2352-3409 |
| Popis: | Ovaries were taken from five sexually mature amphipods: Gammarus fossarum, Gammarus pulex, Gammarus roeseli, Hyallela azteca and Parhyale hawaiensis. The soluble proteome extracted from individual pair of ovaries from five biological replicates was trypsin digested and the resulting peptides were analyzed by high resolution tandem mass spectrometry. The spectra were assigned with four protein sequence databases with different specificities: a RNAseq-derived G. fossarum database; a RNAseq-derived P. hawaiensis database; both originating from ovaries transcriptome; the Daphnia pulex database derived from whole-genome sequencing and the NCBInr database. The best interpretation was obtained for most animals with the specific RNA-seq protein database previously established by means of RNAseq carried out on G. fossarum. Proteins identified in the five amphipod species allow defining the core-proteome of female reproductive tissues of the Senticaudata suborder. The data accompanying the manuscript describing the database searches and comparative analysis Trapp et al., 2015 [1] have been deposited to the ProteomeXchange with identifiers http://www.ebi.ac.uk/pride/archive/projects/PXD002253 (G. fossarum), http://www.ebi.ac.uk/pride/archive/projects/PXD002254 (G. pulex), http://www.ebi.ac.uk/pride/archive/projects/PXD002255 (G. roeseli), http://www.ebi.ac.uk/pride/archive/projects/PXD002256 (H. Azteca), and http://www.ebi.ac.uk/pride/archive/projects/PXD002257 (P. hawaiensis). |
| Databáze: | OpenAIRE |
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