The complete genome sequence of elite bread wheat cultivar, 'Sonmez'
| Autor: | Bala Ani Akpinar, Philippe Leroy, Nathan Watson-Haigh, Ute Baumann, Valerie Barbe, Hikmet Budak |
|---|---|
| Přispěvatelé: | Montana Bioagriculture Inc, Génétique Diversité et Ecophysiologie des Céréales (GDEC), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Clermont Auvergne (UCA), Australian Centre for Plant Functional Genomics, School of Agriculture Food and Wine, University of Adelaide, Australian Genome Research Facility, Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA) |
| Rok vydání: | 2022 |
| Předmět: |
[SDV.GEN]Life Sciences [q-bio]/Genetics
General Immunology and Microbiology [SDV]Life Sciences [q-bio] Triticum aestivum food and beverages General Medicine Bread Sequence Analysis DNA yield General Biochemistry Genetics and Molecular Biology Chromosomes Plant genome sequencing Sonmez Wheat [SDV.BV]Life Sciences [q-bio]/Vegetal Biology General Pharmacology Toxicology and Pharmaceutics [SDV.AEN]Life Sciences [q-bio]/Food and Nutrition Genome Plant Triticum |
| Zdroj: | F1000Research F1000Research, 2022, 11, pp.614. ⟨10.12688/f1000research.121637.1⟩ |
| ISSN: | 2046-1402 |
| DOI: | 10.12688/f1000research.121637.1⟩ |
| Popis: | High-yielding crop varieties will become critical in meeting the future food demand in the face of worsening weather extremes and threatening biotic stressors. The bread wheat cultivar Sonmez-2001 is a registered variety that is notable for its performance under low-irrigation conditions, which further improves upon irrigation. Additionally, Sonmez-2001 is resilient against certain biotic stressors, particularly soil-borne pathogens. Here, we provide a reference-guided whole genome sequence of Sonmez-2001, assembled into 21 chromosomes of the A, B and D genomes and totaling 13.3 gigabase-pairs in length. Additionally, a de novo assembly of an additional 1.05 gigabase-pairs was generated that represents either Sonmez-specific sequences or sequences that considerably diverged between Sonmez and Chinese Spring. Within this de novo assembly, we identified 35 gene models, of which 11 were high-confidence, that may contribute to the favorable traits of this high-performing variety. We identified up to 24 million sequence variants, of which up to 2.4% reside in coding sequences, that can be used to develop molecular markers that should be of immediate use to the cereal community. |
| Databáze: | OpenAIRE |
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