Characterization of the complete genome sequence of pike fry rhabdovirus
| Autor: | Zongxiao Liu, Hong Liu, Yu-lin Jiang, Gao Longying, Junqiang He, Shi Xiujie, Honglian Chen |
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| Rok vydání: | 2009 |
| Předmět: |
Genetics
Whole genome sequencing Genome evolution Genes Viral Molecular Sequence Data Nucleic acid sequence Sequence Homology General Medicine Genome project Genome Viral Vesiculovirus Biology Genome Virology Homology (biology) Nucleoprotein Fish Diseases Viral Proteins Rhabdoviridae Infections Esocidae Animals Gene Phylogeny |
| Zdroj: | Archives of virology. 154(9) |
| ISSN: | 1432-8798 |
| Popis: | The complete genome sequence of pike fry rhabdovirus (PFRV), consisting of 11,097 nucleotides, was determined. The genome contains five genes, encoding the nucleoprotein (N), phosphoprotein (P), matrix protein (M), glycoprotein (G), and RNA-dependent RNA polymerase (L) protein in the order 3′-N-P-M-G-L-5′. 3′ leader- and 5′ trailer- sequences in the PFRV genome show inverse complementarity. The PFRV proteins share the highest homology to the proteins of spring viremia of carp virus (SVCV), ranging from 55.3 to 91.4%. Phylogenetic analysis of the five proteins showed that PFRV clusters with SVCV and is closely related to the mammalian vesiculoviruses, 903/87, STRV and SCRV. |
| Databáze: | OpenAIRE |
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