Pathview Web: user friendly pathway visualization and data integration
| Autor: | Steven G. Blanchard, Weijun Luo, Cory Brouwer, Yeshvant K. Bhavnasi, Gaurav Pant |
|---|---|
| Rok vydání: | 2017 |
| Předmět: |
0301 basic medicine
Web server Gene Expression Biology computer.software_genre World Wide Web User-Computer Interface 03 medical and health sciences 0302 clinical medicine Computer Graphics Genetics Metabolomics Internet User Friendly business.industry Visualization 030104 developmental biology Workflow 030220 oncology & carcinogenesis Web Server Issue The Internet Web service User interface business computer Software Data integration |
| Zdroj: | Nucleic Acids Research |
| ISSN: | 1362-4962 0305-1048 |
| Popis: | Pathway analysis is widely used in omics studies. Pathway-based data integration and visualization is a critical component of the analysis. To address this need, we recently developed a novel R package called Pathview. Pathview maps, integrates and renders a large variety of biological data onto molecular pathway graphs. Here we developed the Pathview Web server, as to make pathway visualization and data integration accessible to all scientists, including those without the special computing skills or resources. Pathview Web features an intuitive graphical web interface and a user centered design. The server not only expands the core functions of Pathview, but also provides many useful features not available in the offline R package. Importantly, the server presents a comprehensive workflow for both regular and integrated pathway analysis of multiple omics data. In addition, the server also provides a RESTful API for programmatic access and conveniently integration in third-party software or workflows. Pathview Web is openly and freely accessible at https://pathview.uncc.edu/. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|